Thanks for the reply. The directory I mentioned is created in a post-build process that combines our kernel with our application – it doesn’t contain any headers that our source code needs to build. In fact, if I delete that directory everything works fine.
Here are some of the logs, if you want more information let me know.
[Info - 13:19:32.199] [SYNC] Synchronizing analyzer configuration for project 'PMSfirmware_torreys_peak1'
[Debug - 13:19:32.357] GET 200 https://sonarcloud.io/api/settings/values.protobuf?component=PMSfirmware_torreys_peak1 | response time=157ms
[Info - 13:19:32.357] Downloaded settings in 157ms
[Debug - 13:19:32.548] GET 200 https://sonarcloud.io/api/qualityprofiles/search.protobuf?project=PMSfirmware_torreys_peak1&organization=pmsfirmware | response time=190ms
[Debug - 13:19:32.548] Downloaded project quality profiles in 191ms
[Info - 13:19:32.548] [SYNC] Fetching rule set for language 'apex' from profile 'AYc0qhweZZXoAw3SbcTw'
[Debug - 13:19:32.719] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcTw&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=170ms
[Debug - 13:19:32.719] Page downloaded in 170ms
[Info - 13:19:32.719] [SYNC] Fetching rule set for language 'c' from profile 'AYc0qhweZZXoAw3SbcUD'
[Debug - 13:19:32.912] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcUD&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=193ms
[Debug - 13:19:32.913] Page downloaded in 193ms
[Info - 13:19:32.913] [SYNC] Fetching rule set for language 'cloudformation' from profile 'AYc0qhweZZXoAw3SbcUF'
[Debug - 13:19:33.073] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcUF&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=159ms
[Debug - 13:19:33.073] Page downloaded in 159ms
[Info - 13:19:33.073] [SYNC] Fetching rule set for language 'cobol' from profile 'AYc0qhweZZXoAw3SbcTs'
[Debug - 13:19:33.244] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcTs&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=171ms
[Debug - 13:19:33.244] Page downloaded in 171ms
[Info - 13:19:33.245] [SYNC] Fetching rule set for language 'cpp' from profile 'AYn6Yp4QPRityZJIF-HW'
[Debug - 13:19:33.461] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYn6Yp4QPRityZJIF-HW&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=216ms
[Debug - 13:19:33.462] Page downloaded in 217ms
[Info - 13:19:33.462] [SYNC] Fetching rule set for language 'css' from profile 'AYc0qhweZZXoAw3SbcT1'
[Debug - 13:19:33.700] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcT1&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=238ms
[Debug - 13:19:33.700] Page downloaded in 238ms
[Info - 13:19:33.700] [SYNC] Fetching rule set for language 'docker' from profile 'AYc0qhwfZZXoAw3SbcUI'
[Debug - 13:19:33.886] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhwfZZXoAw3SbcUI&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=185ms
[Debug - 13:19:33.886] Page downloaded in 185ms
[Info - 13:19:33.886] [SYNC] Fetching rule set for language 'go' from profile 'AYc0qhweZZXoAw3SbcUA'
[Debug - 13:19:34.053] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcUA&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=166ms
[Debug - 13:19:34.053] Page downloaded in 167ms
[Info - 13:19:34.053] [SYNC] Fetching rule set for language 'java' from profile 'AYc0qhwfZZXoAw3SbcUK'
[Debug - 13:19:34.312] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhwfZZXoAw3SbcUK&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=258ms
[Debug - 13:19:34.312] Page downloaded in 258ms
[Debug - 13:19:34.503] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhwfZZXoAw3SbcUK&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=2 | response time=190ms
[Debug - 13:19:34.504] Page downloaded in 191ms
[Info - 13:19:34.504] [SYNC] Fetching rule set for language 'js' from profile 'AYc0qhwfZZXoAw3SbcUJ'
[Debug - 13:19:34.719] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhwfZZXoAw3SbcUJ&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=215ms
[Debug - 13:19:34.720] Page downloaded in 216ms
[Info - 13:19:34.720] [SYNC] Fetching rule set for language 'kubernetes' from profile 'AYc0qhwfZZXoAw3SbcUH'
[Debug - 13:19:34.879] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhwfZZXoAw3SbcUH&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=158ms
[Debug - 13:19:34.879] Page downloaded in 158ms
[Info - 13:19:34.879] [SYNC] Fetching rule set for language 'php' from profile 'AYc0qhweZZXoAw3SbcUC'
[Debug - 13:19:35.073] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcUC&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=193ms
[Debug - 13:19:35.074] Page downloaded in 195ms
[Info - 13:19:35.074] [SYNC] Fetching rule set for language 'plsql' from profile 'AYc0qhweZZXoAw3SbcTz'
[Debug - 13:19:35.258] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcTz&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=183ms
[Debug - 13:19:35.258] Page downloaded in 184ms
[Info - 13:19:35.259] [SYNC] Fetching rule set for language 'py' from profile 'AYc0qhwfZZXoAw3SbcUL'
[Debug - 13:19:35.614] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhwfZZXoAw3SbcUL&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=354ms
[Debug - 13:19:35.614] Page downloaded in 355ms
[Info - 13:19:35.614] [SYNC] Fetching rule set for language 'secrets' from profile 'AYc0qhweZZXoAw3SbcT0'
[Debug - 13:19:35.797] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcT0&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=183ms
[Debug - 13:19:35.798] Page downloaded in 183ms
[Info - 13:19:35.798] [SYNC] Fetching rule set for language 'terraform' from profile 'AYc0qhweZZXoAw3SbcUB'
[Debug - 13:19:35.973] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcUB&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=175ms
[Debug - 13:19:35.974] Page downloaded in 175ms
[Info - 13:19:35.974] [SYNC] Fetching rule set for language 'ts' from profile 'AYc0qhwfZZXoAw3SbcUN'
[Debug - 13:19:36.185] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhwfZZXoAw3SbcUN&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=211ms
[Debug - 13:19:36.186] Page downloaded in 212ms
[Info - 13:19:36.186] [SYNC] Fetching rule set for language 'web' from profile 'AYc0qhweZZXoAw3SbcT3'
[Debug - 13:19:36.348] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcT3&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=162ms
[Debug - 13:19:36.348] Page downloaded in 162ms
[Info - 13:19:36.348] [SYNC] Fetching rule set for language 'xml' from profile 'AYc0qhweZZXoAw3SbcTu'
[Debug - 13:19:36.514] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcTu&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=165ms
[Debug - 13:19:36.514] Page downloaded in 165ms
[Info - 13:19:36.514] [SYNC] Fetching rule set for language 'yaml' from profile 'AYc0qhweZZXoAw3SbcT_'
[Debug - 13:19:36.663] GET 200 https://sonarcloud.io/api/rules/search.protobuf?qprofile=AYc0qhweZZXoAw3SbcT_&organization=pmsfirmware&activation=true&f=templateKey,actives&types=CODE_SMELL,BUG,VULNERABILITY,SECURITY_HOTSPOT&s=key&ps=500&p=1 | response time=149ms
[Debug - 13:19:36.663] Page downloaded in 149ms
[Debug - 13:19:36.664] Storing project analyzer configuration in /home/abond/.sonarlint/storage/706d736669726d77617265/projects/504d536669726d776172655f746f72726579735f7065616b31/analyzer_config.pb
[Info - 13:19:36.665] [SYNC] Synchronizing project branches for project 'PMSfirmware_torreys_peak1'
[Debug - 13:19:36.848] GET 200 https://sonarcloud.io/api/project_branches/list.protobuf?project=PMSfirmware_torreys_peak1 | response time=182ms
[Debug - 13:19:36.848] Storing project branches in /home/abond/.sonarlint/storage/706d736669726d77617265/projects/504d536669726d776172655f746f72726579735f7065616b31/project_branches.pb
[Debug - 13:19:36.988] GET 200 https://sonarcloud.io/api/measures/component.protobuf?additionalFields=periods&metricKeys=projects&component=PMSfirmware_torreys_peak1 | response time=139ms
[Debug - 13:19:36.988] Storing new code definition in /home/abond/.sonarlint/storage/706d736669726d77617265/projects/504d536669726d776172655f746f72726579735f7065616b31/new_code_definition.pb
[Debug - 13:19:36.989] Incremental issue sync is not supported. Skipping.
[Debug - 13:19:36.989] Incremental taint issue sync is not supported. Skipping.
[Debug - 13:19:36.989] Incremental hotspot sync is not supported. Skipping.
[Error - 13:19:37.340] Analysis failed
java.lang.IllegalStateException: Unable to list files in directory /home/abond/src/torreys_peak
at org.sonarsource.sonarlint.ls.util.FileUtils.allRelativePathsForFilesInTree(FileUtils.java:96)
at org.sonarsource.sonarlint.ls.util.FileUtils.allRelativePathsForFilesInTree(FileUtils.java:85)
at org.sonarsource.sonarlint.ls.connected.ProjectBindingManager.computeProjectBinding(ProjectBindingManager.java:221)
at org.sonarsource.sonarlint.ls.connected.ProjectBindingManager.lambda$getBinding$0(ProjectBindingManager.java:185)
at java.base/java.util.concurrent.ConcurrentHashMap.computeIfAbsent(Unknown Source)
at org.sonarsource.sonarlint.ls.connected.ProjectBindingManager.getBinding(ProjectBindingManager.java:178)
at org.sonarsource.sonarlint.ls.connected.ProjectBindingManager.getBinding(ProjectBindingManager.java:146)
at org.sonarsource.sonarlint.ls.AnalysisTaskExecutor.analyze(AnalysisTaskExecutor.java:190)
at org.sonarsource.sonarlint.ls.AnalysisTaskExecutor.lambda$analyze$2(AnalysisTaskExecutor.java:159)
at java.base/java.util.HashMap.forEach(Unknown Source)
at org.sonarsource.sonarlint.ls.AnalysisTaskExecutor.analyze(AnalysisTaskExecutor.java:159)
at org.sonarsource.sonarlint.ls.AnalysisTaskExecutor.run(AnalysisTaskExecutor.java:131)
at org.sonarsource.sonarlint.ls.AnalysisScheduler.lambda$analyzeAsync$1(AnalysisScheduler.java:241)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
Caused by: java.nio.file.AccessDeniedException: /home/abond/src/torreys_peak/torreys/zc702/release_0.2.0/root/var/lib/sudo
at java.base/sun.nio.fs.UnixException.translateToIOException(Unknown Source)
at java.base/sun.nio.fs.UnixException.rethrowAsIOException(Unknown Source)
at java.base/sun.nio.fs.UnixException.rethrowAsIOException(Unknown Source)
at java.base/sun.nio.fs.UnixFileSystemProvider.newDirectoryStream(Unknown Source)
at java.base/java.nio.file.Files.newDirectoryStream(Unknown Source)
at java.base/java.nio.file.FileTreeWalker.visit(Unknown Source)
at java.base/java.nio.file.FileTreeWalker.next(Unknown Source)
at java.base/java.nio.file.Files.walkFileTree(Unknown Source)
at java.base/java.nio.file.Files.walkFileTree(Unknown Source)
at org.sonarsource.sonarlint.ls.util.FileUtils.allRelativePathsForFilesInTree(FileUtils.java:94)
... 17 more