Hello,
We are using SonarQube 8.9 LTS in OpenShift with a Postgres 13 Database and Jenkins as an Orchestrator. Since upgrading to the latest LTS version of SonarQube, we are seeing this error randomly. Generally works itself out if we run another pipeline or two, but it is still problematic. The error fails in the Quality Gate Stage, saying that background tasks failed. We would like to know what may be causing these random errors and what we may be able to do about it.
Thanks,
Jason Butler
Error Details
org.sonar.ce.task.projectanalysis.component.VisitException: Visit of Component {key=dotnet50-tester:contactsapi.tests/coverage.opencover.xml,uuid=AXq_RL0uyp7rhJ1ggY_L,type=FILE} failed
at org.sonar.ce.task.projectanalysis.component.VisitException.rethrowOrWrap(VisitException.java:44)
at org.sonar.ce.task.projectanalysis.component.DepthTraversalTypeAwareCrawler.visit(DepthTraversalTypeAwareCrawler.java:41)
at org.sonar.ce.task.projectanalysis.component.DepthTraversalTypeAwareCrawler.visitChildren(DepthTraversalTypeAwareCrawler.java:95)
at org.sonar.ce.task.projectanalysis.component.DepthTraversalTypeAwareCrawler.visitImpl(DepthTraversalTypeAwareCrawler.java:54)
at org.sonar.ce.task.projectanalysis.component.DepthTraversalTypeAwareCrawler.visit(DepthTraversalTypeAwareCrawler.java:39)
at org.sonar.ce.task.projectanalysis.component.DepthTraversalTypeAwareCrawler.visitChildren(DepthTraversalTypeAwareCrawler.java:95)
at org.sonar.ce.task.projectanalysis.component.DepthTraversalTypeAwareCrawler.visitImpl(DepthTraversalTypeAwareCrawler.java:54)
at org.sonar.ce.task.projectanalysis.component.DepthTraversalTypeAwareCrawler.visit(DepthTraversalTypeAwareCrawler.java:39)
at org.sonar.ce.task.projectanalysis.source.PersistFileSourcesStep.execute(PersistFileSourcesStep.java:72)
at org.sonar.ce.task.step.ComputationStepExecutor.executeStep(ComputationStepExecutor.java:81)
at org.sonar.ce.task.step.ComputationStepExecutor.executeSteps(ComputationStepExecutor.java:72)
at org.sonar.ce.task.step.ComputationStepExecutor.execute(ComputationStepExecutor.java:59)
at org.sonar.ce.task.projectanalysis.taskprocessor.ReportTaskProcessor.process(ReportTaskProcessor.java:81)
at org.sonar.ce.taskprocessor.CeWorkerImpl$ExecuteTask.executeTask(CeWorkerImpl.java:212)
at org.sonar.ce.taskprocessor.CeWorkerImpl$ExecuteTask.run(CeWorkerImpl.java:194)
at org.sonar.ce.taskprocessor.CeWorkerImpl.findAndProcessTask(CeWorkerImpl.java:160)
at org.sonar.ce.taskprocessor.CeWorkerImpl$TrackRunningState.get(CeWorkerImpl.java:135)
at org.sonar.ce.taskprocessor.CeWorkerImpl.call(CeWorkerImpl.java:87)
at org.sonar.ce.taskprocessor.CeWorkerImpl.call(CeWorkerImpl.java:53)
at com.google.common.util.concurrent.TrustedListenableFutureTask$TrustedFutureInterruptibleTask.runInterruptibly(TrustedListenableFutureTask.java:125)
at com.google.common.util.concurrent.InterruptibleTask.run(InterruptibleTask.java:69)
at com.google.common.util.concurrent.TrustedListenableFutureTask.run(TrustedListenableFutureTask.java:78)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
Caused by: java.lang.IllegalStateException: Cannot persist sources of dotnet50-tester:contactsapi.tests/coverage.opencover.xml
at org.sonar.ce.task.projectanalysis.source.PersistFileSourcesStep$FileSourceVisitor.visitFile(PersistFileSourcesStep.java:105)
at org.sonar.ce.task.projectanalysis.component.DepthTraversalTypeAwareCrawler.visitNode(DepthTraversalTypeAwareCrawler.java:76)
at org.sonar.ce.task.projectanalysis.component.DepthTraversalTypeAwareCrawler.visitImpl(DepthTraversalTypeAwareCrawler.java:51)
at org.sonar.ce.task.projectanalysis.component.DepthTraversalTypeAwareCrawler.visit(DepthTraversalTypeAwareCrawler.java:39)
... 26 more
Caused by: org.apache.ibatis.exceptions.PersistenceException:
### Error updating database. Cause: org.postgresql.util.PSQLException: ERROR: unexpected data beyond EOF in block 16816 of relation base/16385/16492
Hint: This has been seen to occur with buggy kernels; consider updating your system.
### The error may exist in org.sonar.db.source.FileSourceMapper
### The error may involve org.sonar.db.source.FileSourceMapper.update-Inline
### The error occurred while setting parameters
### SQL: update file_sources set updated_at = ?, binary_data = ?, line_hashes = ?, line_hashes_version = ?, line_count = ?, data_hash = ?, src_hash = ?, revision = ? where uuid = ?
### Cause: org.postgresql.util.PSQLException: ERROR: unexpected data beyond EOF in block 16816 of relation base/16385/16492
Hint: This has been seen to occur with buggy kernels; consider updating your system.
at org.apache.ibatis.exceptions.ExceptionFactory.wrapException(ExceptionFactory.java:30)
at org.apache.ibatis.session.defaults.DefaultSqlSession.update(DefaultSqlSession.java:199)
at org.apache.ibatis.binding.MapperMethod.execute(MapperMethod.java:67)
at org.apache.ibatis.binding.MapperProxy$PlainMethodInvoker.invoke(MapperProxy.java:152)
at org.apache.ibatis.binding.MapperProxy.invoke(MapperProxy.java:85)
at com.sun.proxy.$Proxy39.update(Unknown Source)
at org.sonar.db.source.FileSourceDao.update(FileSourceDao.java:122)
at org.sonar.ce.task.projectanalysis.source.PersistFileSourcesStep$FileSourceVisitor.persistSource(PersistFileSourcesStep.java:150)
at org.sonar.ce.task.projectanalysis.source.PersistFileSourcesStep$FileSourceVisitor.visitFile(PersistFileSourcesStep.java:103)
... 29 more
Caused by: org.postgresql.util.PSQLException: ERROR: unexpected data beyond EOF in block 16816 of relation base/16385/16492
Hint: This has been seen to occur with buggy kernels; consider updating your system.
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2553)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2285)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:323)
at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:481)
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:401)
at org.postgresql.jdbc.PgPreparedStatement.executeWithFlags(PgPreparedStatement.java:164)
at org.postgresql.jdbc.PgPreparedStatement.execute(PgPreparedStatement.java:153)
at org.apache.commons.dbcp2.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.java:94)
at org.apache.commons.dbcp2.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.java:94)
at org.apache.ibatis.executor.statement.PreparedStatementHandler.update(PreparedStatementHandler.java:47)
at org.apache.ibatis.executor.statement.RoutingStatementHandler.update(RoutingStatementHandler.java:74)
at org.apache.ibatis.executor.ReuseExecutor.doUpdate(ReuseExecutor.java:52)
at org.apache.ibatis.executor.BaseExecutor.update(BaseExecutor.java:117)
at org.apache.ibatis.executor.CachingExecutor.update(CachingExecutor.java:76)
at org.apache.ibatis.session.defaults.DefaultSqlSession.update(DefaultSqlSession.java:197)
... 36 more
Close
