Jgit Error during SonarScanner execution

SonarQube Cloud
,
1

Error

We started seeing this error this morning (2023.10.31) during execution of sonar-scanner. It is preventing CI from passing and impacting development

error 31-Oct-2023 14:35:31 at org.eclipse.jgit.util.FS.execute(FS.java:2346)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.filterClean(WorkingTreeIterator.java:514)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.possiblyFilteredInputStream(WorkingTreeIterator.java:452)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.idBufferBlob(WorkingTreeIterator.java:389)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.idBuffer(WorkingTreeIterator.java:311)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.AbstractTreeIterator.getEntryObjectId(AbstractTreeIterator.java:408)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.contentCheck(WorkingTreeIterator.java:1073)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.isModified(WorkingTreeIterator.java:982)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.filter.IndexDiffFilter.include(IndexDiffFilter.java:204)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.filter.TreeFilter.matchFilter(TreeFilter.java:195)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.filter.AndTreeFilter$Binary.matchFilter(AndTreeFilter.java:110)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.TreeWalk.next(TreeWalk.java:917)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:485)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:384)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:614)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:384)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:614)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:384)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:358)
error 31-Oct-2023 14:35:31 at org.eclipse.jgit.api.StatusCommand.call(StatusCommand.java:122)
error 31-Oct-2023 14:35:31 at org.sonar.plugins.common.GitTrackedFilePredicate.<init>(GitTrackedFilePredicate.java:41)
error 31-Oct-2023 14:35:31 at org.sonar.plugins.common.TextAndSecretsSensor.constructFilePredicate(TextAndSecretsSensor.java:112)
error 31-Oct-2023 14:35:31 at org.sonar.plugins.common.TextAndSecretsSensor.execute(TextAndSecretsSensor.java:93)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.sensor.AbstractSensorWrapper.analyse(AbstractSensorWrapper.java:62)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.sensor.ModuleSensorsExecutor.execute(ModuleSensorsExecutor.java:75)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.sensor.ModuleSensorsExecutor.lambda$execute$1(ModuleSensorsExecutor.java:48)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.sensor.ModuleSensorsExecutor.withModuleStrategy(ModuleSensorsExecutor.java:66)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.sensor.ModuleSensorsExecutor.execute(ModuleSensorsExecutor.java:48)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.scan.ModuleScanContainer.doAfterStart(ModuleScanContainer.java:64)
error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:123)
error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:109)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.scan.ProjectScanContainer.scan(ProjectScanContainer.java:173)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.scan.ProjectScanContainer.scanRecursively(ProjectScanContainer.java:169)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.scan.ProjectScanContainer.doAfterStart(ProjectScanContainer.java:140)
error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:123)
error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:109)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.bootstrap.ScannerContainer.doAfterStart(ScannerContainer.java:398)
error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:123)
error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:109)
error 31-Oct-2023 14:35:31 at org.sonar.scanner.bootstrap.GlobalContainer.doAfterStart(GlobalContainer.java:128)
error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:123)
error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:109)
error 31-Oct-2023 14:35:31 at org.sonar.batch.bootstrapper.Batch.doExecute(Batch.java:57)
error 31-Oct-2023 14:35:31 at org.sonar.batch.bootstrapper.Batch.execute(Batch.java:51)
error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.api.internal.batch.BatchIsolatedLauncher.execute(BatchIsolatedLauncher.java:46)
error 31-Oct-2023 14:35:31 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
error 31-Oct-2023 14:35:31 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
error 31-Oct-2023 14:35:31 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
error 31-Oct-2023 14:35:31 at java.base/java.lang.reflect.Method.invoke(Unknown Source)
error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.api.internal.IsolatedLauncherProxy.invoke(IsolatedLauncherProxy.java:60)
error 31-Oct-2023 14:35:31 at jdk.proxy1/jdk.proxy1.$Proxy0.execute(Unknown Source)
error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.api.EmbeddedScanner.doExecute(EmbeddedScanner.java:189)
error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.api.EmbeddedScanner.execute(EmbeddedScanner.java:138)
error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.cli.Main.execute(Main.java:126)
error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.cli.Main.execute(Main.java:81)
error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.cli.Main.main(Main.java:62)
error 31-Oct-2023 14:35:31 Caused by: java.lang.ClassNotFoundException: org.eclipse.jgit.util.FS$ExecutionResult
error 31-Oct-2023 14:35:31 at org.sonar.classloader.ParentFirstStrategy.loadClass(ParentFirstStrategy.java:25)
error 31-Oct-2023 14:35:31 at org.sonar.classloader.ClassRealm.loadClass(ClassRealm.java:83)
error 31-Oct-2023 14:35:31 at org.sonar.classloader.ClassRealm.loadClass(ClassRealm.java:72)
error 31-Oct-2023 14:35:31 ... 56 more

Extended log:
jgit_error.txt (1.5 MB)

Environment

  • Sonar: SonarCloud
  • ALM: Bitbucket Cloud
  • CI system: Bamboo (sonar-scanner from cli)
  • sonar-scanner: 5.0.1.3006
  • using a Docker image which did not change between pass/fail to execute the scan
  • running the docker image from an AWS Elastic agent which did not change between pass/fail

Repo

  • Languages of the repository: C
  • Notable: this repository has submodules

Config

sonar.projectKey=***
sonar.projectName=***
sonar.sources=src
sonar.exclusions=\
    external/**/*, \
    Core/**/*, \
    Drivers/**/*, \
    Debug/**/*, \
    src/Template.*, \
    .settings/**/*, \
    .metadata/**/*, \
    tools/**/*

CLI

sonar-scanner \
    -Dsonar.projectVersion=0.0.${bamboo_buildNumber} \
    -Dsonar.verbose=true \
    -Dsonar.cfamily.compile-commands=build/compile_commands.json \
    -Dsonar.coverageReportPaths=build/Artifacts/cov/sonarqube/ss.cov.sonarqube.xml \
    -Dsonar.host.url=${bamboo_sonar_cloud_host_url} \
    -Dsonar.organization=${bamboo_sonar_cloud_organization} \
    -Dsonar.token=${bamboo_sonar_cloud_token_secret} \
    -Dsonar.branch.name=develop \
    -X

Other

We noticed a plugin change was released between builds which seems to add a jgit depenedency.

No issues:

build	30-Oct-2023 17:43:05	17:43:05.581 DEBUG: GET 200 https://scanner.sonarcloud.io/plugins/text/versions/1e105b6a689399faa429b0cc82ba3560.jar | time=15ms

Issue present:

build	31-Oct-2023 13:11:10	13:11:10.734 DEBUG: GET 200 https://scanner.sonarcloud.io/plugins/text/versions/b24d5dd4fb39549b777ccbca432ff77b.jar | time=14ms
4 Likes
2

I’m seeing this issue as well. No Sonar scans are completing, and my team is stuck just having to override our CI pipeline and merge past failures.

3

Ezra, do you happen to have a recursive submodules in your repo? That seems to be a notable difference between repos which scan fine for us, versus those that do not.

<repo root>
|_ submodule A
   |_ submodule Z (recursive)
|_ submodule B
   |_ submodule Z (recursive)
|_ submodule Z (in root)
4

Yes, we do.

1 Like
5

We’re having a similar issue. The TextAndSecrets scanner from the sonar-text plugin appears to be missing the class org.eclipse.jgit.util.FS$ExecutionResult in version 2.6.1.1316
Other classes from org.eclipse.jgit.util.FS are present in the jar, just not ExecutionResult

This is blocking all of our sonar scans on sonarcloud using this version of the plugin, and as the plugin goes into the users sonar cache I don’t see an obvious way to force a downgrade of the version used, or to even skip the scanner temporarily.

4 Likes
7

Hi @william-keen-aptitud
Just to confirm, are you experiencing this problem today?

8

I can confirm I just experienced it like two minutes ago in a CI job on my project.

1 Like
9

Hi,

Thanks for the confirmation. We did release a new version of that sensor yesterday. We’re starting the rollback now. It should be done in a few hours.

 
Ann

2 Likes
10

Hi,
We completed the rollback and restored the serving of the ‘sonar-text-plugin-2.5.0.2293.jar’ version. You should no longer see the issue once you re-run the CI pipeline.

1 Like
11

Hi all,

Can anyone confirm whether they’re still seeing the problem or not?

 
Thx,
Ann

1 Like
12

I have confirmed it is working for us as it did before.
Thank you Ann, Matt, and Duarte.

2 Likes
13

Hi @bherger,

Thanks for the confirmation!

 
Ann

16

I can also confirm, we’re functional again. Thank you for the quick response

2 Likes