Hi,
Welcome to the community!
The first step is to check your analysis logs to see what they say about your coverage reports. I’m guessing they’re full of warnings that results are being ignored because they’re for file names analysis doesn’t recognize.
Can you post your log? The analysis / scanner log is what’s output from the analysis command. Hopefully, the log you provide - redacted as necessary - will include that command as well.
This guide will help you find them.
Ann