The Renesas RX compiler should indeed be supported (CPP-1989)
Although I’m not familiar with Ninja, I recommend ensuring that you’re performing a clean (or full) build to avoid any potential issues.
It’s likely that the build-wrapper.log file contains more detailed information that can provide insights into how the compiler is being invoked, as well as the specific compiler being used. If you don’t get anywhere with making sure you have a clean build, uploading that would be a next step.
It’s worth noting that SonarQube v9.9 LTS is very nearly end-of-life. Considering that SonarQube v2025.1 includes C/C++ AutoConfig, which allows you to bypass the need for the build wrapper entirely, upgrading to the latest version is reccomended.