# Jgit Error during SonarScanner execution **URL:** \ **Category:** SonarQube Cloud\ **Tags:** scanner, sonarqube-cloud\ **Created:** [October 31, 2023, 4:07pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579 "2023-10-31T16:07:37Z")\ **Posts on this page:** 13\ **Page:** 1
**Author:** ![bherger](https://avatars.discourse-cdn.com/v4/letter/b/54ee81/32.png) [@bherger](https://community.sonarsource.com/u/bherger)\ **Post date:** [October 31, 2023, 4:07pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/1 "2023-10-31T16:07:37Z")
## Error We started seeing this error this morning (2023.10.31) during execution of sonar-scanner. It is preventing CI from passing and impacting development ```auto error 31-Oct-2023 14:35:31 at org.eclipse.jgit.util.FS.execute(FS.java:2346) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.filterClean(WorkingTreeIterator.java:514) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.possiblyFilteredInputStream(WorkingTreeIterator.java:452) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.idBufferBlob(WorkingTreeIterator.java:389) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.idBuffer(WorkingTreeIterator.java:311) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.AbstractTreeIterator.getEntryObjectId(AbstractTreeIterator.java:408) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.contentCheck(WorkingTreeIterator.java:1073) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.WorkingTreeIterator.isModified(WorkingTreeIterator.java:982) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.filter.IndexDiffFilter.include(IndexDiffFilter.java:204) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.filter.TreeFilter.matchFilter(TreeFilter.java:195) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.filter.AndTreeFilter$Binary.matchFilter(AndTreeFilter.java:110) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.treewalk.TreeWalk.next(TreeWalk.java:917) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:485) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:384) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:614) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:384) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:614) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:384) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.lib.IndexDiff.diff(IndexDiff.java:358) error 31-Oct-2023 14:35:31 at org.eclipse.jgit.api.StatusCommand.call(StatusCommand.java:122) error 31-Oct-2023 14:35:31 at org.sonar.plugins.common.GitTrackedFilePredicate.(GitTrackedFilePredicate.java:41) error 31-Oct-2023 14:35:31 at org.sonar.plugins.common.TextAndSecretsSensor.constructFilePredicate(TextAndSecretsSensor.java:112) error 31-Oct-2023 14:35:31 at org.sonar.plugins.common.TextAndSecretsSensor.execute(TextAndSecretsSensor.java:93) error 31-Oct-2023 14:35:31 at org.sonar.scanner.sensor.AbstractSensorWrapper.analyse(AbstractSensorWrapper.java:62) error 31-Oct-2023 14:35:31 at org.sonar.scanner.sensor.ModuleSensorsExecutor.execute(ModuleSensorsExecutor.java:75) error 31-Oct-2023 14:35:31 at org.sonar.scanner.sensor.ModuleSensorsExecutor.lambda$execute$1(ModuleSensorsExecutor.java:48) error 31-Oct-2023 14:35:31 at org.sonar.scanner.sensor.ModuleSensorsExecutor.withModuleStrategy(ModuleSensorsExecutor.java:66) error 31-Oct-2023 14:35:31 at org.sonar.scanner.sensor.ModuleSensorsExecutor.execute(ModuleSensorsExecutor.java:48) error 31-Oct-2023 14:35:31 at org.sonar.scanner.scan.ModuleScanContainer.doAfterStart(ModuleScanContainer.java:64) error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:123) error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:109) error 31-Oct-2023 14:35:31 at org.sonar.scanner.scan.ProjectScanContainer.scan(ProjectScanContainer.java:173) error 31-Oct-2023 14:35:31 at org.sonar.scanner.scan.ProjectScanContainer.scanRecursively(ProjectScanContainer.java:169) error 31-Oct-2023 14:35:31 at org.sonar.scanner.scan.ProjectScanContainer.doAfterStart(ProjectScanContainer.java:140) error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:123) error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:109) error 31-Oct-2023 14:35:31 at org.sonar.scanner.bootstrap.ScannerContainer.doAfterStart(ScannerContainer.java:398) error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:123) error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:109) error 31-Oct-2023 14:35:31 at org.sonar.scanner.bootstrap.GlobalContainer.doAfterStart(GlobalContainer.java:128) error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:123) error 31-Oct-2023 14:35:31 at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:109) error 31-Oct-2023 14:35:31 at org.sonar.batch.bootstrapper.Batch.doExecute(Batch.java:57) error 31-Oct-2023 14:35:31 at org.sonar.batch.bootstrapper.Batch.execute(Batch.java:51) error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.api.internal.batch.BatchIsolatedLauncher.execute(BatchIsolatedLauncher.java:46) error 31-Oct-2023 14:35:31 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) error 31-Oct-2023 14:35:31 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) error 31-Oct-2023 14:35:31 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) error 31-Oct-2023 14:35:31 at java.base/java.lang.reflect.Method.invoke(Unknown Source) error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.api.internal.IsolatedLauncherProxy.invoke(IsolatedLauncherProxy.java:60) error 31-Oct-2023 14:35:31 at jdk.proxy1/jdk.proxy1.$Proxy0.execute(Unknown Source) error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.api.EmbeddedScanner.doExecute(EmbeddedScanner.java:189) error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.api.EmbeddedScanner.execute(EmbeddedScanner.java:138) error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.cli.Main.execute(Main.java:126) error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.cli.Main.execute(Main.java:81) error 31-Oct-2023 14:35:31 at org.sonarsource.scanner.cli.Main.main(Main.java:62) error 31-Oct-2023 14:35:31 Caused by: java.lang.ClassNotFoundException: org.eclipse.jgit.util.FS$ExecutionResult error 31-Oct-2023 14:35:31 at org.sonar.classloader.ParentFirstStrategy.loadClass(ParentFirstStrategy.java:25) error 31-Oct-2023 14:35:31 at org.sonar.classloader.ClassRealm.loadClass(ClassRealm.java:83) error 31-Oct-2023 14:35:31 at org.sonar.classloader.ClassRealm.loadClass(ClassRealm.java:72) error 31-Oct-2023 14:35:31 ... 56 more ``` Extended log: [jgit\_error.txt](https://community.sonarsource.com/uploads/short-url/6cOfsxNTgru6ZMqJBJIklNK2O2D.txt) (1.5 MB) ## Environment - Sonar: SonarCloud - ALM: Bitbucket Cloud - CI system: Bamboo (sonar-scanner from cli) - sonar-scanner: 5.0.1.3006 - using a Docker image which did not change between pass/fail to execute the scan - running the docker image from an AWS Elastic agent which did not change between pass/fail ## Repo - Languages of the repository: C - **Notable** : this repository has submodules ## Config ```auto sonar.projectKey=*** sonar.projectName=*** sonar.sources=src sonar.exclusions=\ external/**/*, \ Core/**/*, \ Drivers/**/*, \ Debug/**/*, \ src/Template.*, \ .settings/**/*, \ .metadata/**/*, \ tools/**/* ``` ## CLI ```auto sonar-scanner \ -Dsonar.projectVersion=0.0.${bamboo_buildNumber} \ -Dsonar.verbose=true \ -Dsonar.cfamily.compile-commands=build/compile_commands.json \ -Dsonar.coverageReportPaths=build/Artifacts/cov/sonarqube/ss.cov.sonarqube.xml \ -Dsonar.host.url=${bamboo_sonar_cloud_host_url} \ -Dsonar.organization=${bamboo_sonar_cloud_organization} \ -Dsonar.token=${bamboo_sonar_cloud_token_secret} \ -Dsonar.branch.name=develop \ -X ``` ## Other We noticed a plugin change was released between builds which seems to add a jgit depenedency. No issues: ```auto build 30-Oct-2023 17:43:05 17:43:05.581 DEBUG: GET 200 https://scanner.sonarcloud.io/plugins/text/versions/1e105b6a689399faa429b0cc82ba3560.jar | time=15ms ``` Issue present: ```auto build 31-Oct-2023 13:11:10 13:11:10.734 DEBUG: GET 200 https://scanner.sonarcloud.io/plugins/text/versions/b24d5dd4fb39549b777ccbca432ff77b.jar | time=14ms ``` ---
**Author:** ![ezrabrooks](https://avatars.discourse-cdn.com/v4/letter/e/e8c25b/32.png) [@ezrabrooks](https://community.sonarsource.com/u/ezrabrooks)\ **Post date:** [October 31, 2023, 8:09pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/2 "2023-10-31T20:09:28Z")
I’m seeing this issue as well. No Sonar scans are completing, and my team is stuck just having to override our CI pipeline and merge past failures. ---
**Author:** ![bherger](https://avatars.discourse-cdn.com/v4/letter/b/54ee81/32.png) [@bherger](https://community.sonarsource.com/u/bherger)\ **Post date:** [November 1, 2023, 1:06pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/3 "2023-11-01T13:06:41Z")
Ezra, do you happen to have a recursive submodules in your repo? That seems to be a notable difference between repos which scan fine for us, versus those that do not. ```auto |_ submodule A |_ submodule Z (recursive) |_ submodule B |_ submodule Z (recursive) |_ submodule Z (in root) ``` ---
**Author:** ![ezrabrooks](https://avatars.discourse-cdn.com/v4/letter/e/e8c25b/32.png) [@ezrabrooks](https://community.sonarsource.com/u/ezrabrooks)\ **Post date:** [November 1, 2023, 2:11pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/4 "2023-11-01T14:11:59Z")
Yes, we do. ---
**Author:** ![william-keen-aptitud](https://dub1.discourse-cdn.com/sonarsource/user_avatar/community.sonarsource.com/william-keen-aptitud/32/51123_2.png) [@william-keen-aptitud](https://community.sonarsource.com/u/william-keen-aptitud)\ **Post date:** [November 1, 2023, 4:02pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/5 "2023-11-01T16:02:59Z")
We’re having a similar issue. The TextAndSecrets scanner from the sonar-text plugin appears to be missing the class org.eclipse.jgit.util.FS$ExecutionResult in version 2.6.1.1316 Other classes from org.eclipse.jgit.util.FS are present in the jar, just not ExecutionResult This is blocking all of our sonar scans on sonarcloud using this version of the plugin, and as the plugin goes into the users sonar cache I don’t see an obvious way to force a downgrade of the version used, or to even skip the scanner temporarily. ---
**Author:** ![dmeneses](https://dub1.discourse-cdn.com/sonarsource/user_avatar/community.sonarsource.com/dmeneses/32/2933_2.png) [@dmeneses](https://community.sonarsource.com/u/dmeneses)\ **Post date:** [November 1, 2023, 4:39pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/7 "2023-11-01T16:39:28Z")
Hi @william-keen-aptitud Just to confirm, are you experiencing this problem today? ---
**Author:** ![ezrabrooks](https://avatars.discourse-cdn.com/v4/letter/e/e8c25b/32.png) [@ezrabrooks](https://community.sonarsource.com/u/ezrabrooks)\ **Post date:** [November 1, 2023, 4:45pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/8 "2023-11-01T16:45:57Z")
I can confirm I just experienced it like two minutes ago in a CI job on my project. ---
**Author:** ![ganncamp](https://dub1.discourse-cdn.com/sonarsource/user_avatar/community.sonarsource.com/ganncamp/32/1261_2.png) [@ganncamp](https://community.sonarsource.com/u/ganncamp)\ **Post date:** [November 1, 2023, 4:59pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/9 "2023-11-01T16:59:06Z")
Hi, Thanks for the confirmation. We did release a new version of that sensor yesterday. We’re starting the rollback now. It should be done in a few hours.   Ann ---
**Author:** ![matt.bulwan](https://avatars.discourse-cdn.com/v4/letter/m/ee7513/32.png) [@matt.bulwan](https://community.sonarsource.com/u/matt.bulwan)\ **Post date:** [November 1, 2023, 8:11pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/10 "2023-11-01T20:11:07Z")
Hi, We completed the rollback and restored the serving of the ‘sonar-text-plugin-2.5.0.2293.jar’ version. You should no longer see the issue once you re-run the CI pipeline. ---
**Author:** ![ganncamp](https://dub1.discourse-cdn.com/sonarsource/user_avatar/community.sonarsource.com/ganncamp/32/1261_2.png) [@ganncamp](https://community.sonarsource.com/u/ganncamp)\ **Post date:** [November 2, 2023, 12:48pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/11 "2023-11-02T12:48:44Z")
Hi all, Can anyone confirm whether they’re still seeing the problem or not?   Thx, Ann ---
**Author:** ![bherger](https://avatars.discourse-cdn.com/v4/letter/b/54ee81/32.png) [@bherger](https://community.sonarsource.com/u/bherger)\ **Post date:** [November 2, 2023, 2:10pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/12 "2023-11-02T14:10:01Z")
I have confirmed it is working for us as it did before. Thank you Ann, Matt, and Duarte. ---
**Author:** ![ganncamp](https://dub1.discourse-cdn.com/sonarsource/user_avatar/community.sonarsource.com/ganncamp/32/1261_2.png) [@ganncamp](https://community.sonarsource.com/u/ganncamp)\ **Post date:** [November 2, 2023, 2:28pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/13 "2023-11-02T14:28:28Z")
Hi @bherger, Thanks for the confirmation!   Ann ---
**Author:** ![william-keen-aptitud](https://dub1.discourse-cdn.com/sonarsource/user_avatar/community.sonarsource.com/william-keen-aptitud/32/51123_2.png) [@william-keen-aptitud](https://community.sonarsource.com/u/william-keen-aptitud)\ **Post date:** [November 2, 2023, 3:29pm UTC](https://community.sonarsource.com/t/jgit-error-during-sonarscanner-execution/103579/16 "2023-11-02T15:29:46Z")
I can also confirm, we’re functional again. Thank you for the quick response